MaxQuant Workshop

Introduction

The MaxQuant workshop in Dr. Juergen Cox’s group provides hands-on training in the computational analysis of proteomics data generated by modern mass spectrometers. Since the first MaxQuant Summer School in 2009, this annual event has attracted hundreds of participants every year.

The two-day workshop in Guangzhou will consist of lectures that focus on theory and tutorials that focus on how to use the software with the dataset we provide. The developers of the software will show the DDA and DIA analysis with latest MaxQuant and the downstream analysis with Perseus. We’ll also introduce some advanced analysis such as PTMs, single cell proteomics, etc. There will also be a Q&A session at the end of the day to answer any questions not covered at the end of the presentation. The workshop is suitable for both beginners and experienced proteomics researchers.

Photos from previous MaxQuant Summer School

MaxQuant Summer School 2024 in Munich, Germany

MaxQuant Summer School 2025 in Utrecht, Netherlands

Preliminary program

10.10

  • Time Speaker Session / Topic
  • Time:09:00
    Speaker:

    Session / Topic:

    MaxQuant DDA workflow

  • Time:09:45
    Speaker:

    Session / Topic:

    DDA label free quantification

  • Time:10:30
    Speaker:

    -

    Session / Topic:

    Coffee break

  • Time:11:00
    Speaker:

    Session / Topic:

    MaxQuant DDA tutorial I

  • Time:11:45
    Speaker:

    Session / Topic:

    MaxQuant DDA tutorial II

  • Time:12:30
    Speaker:

    -

    Session / Topic:

    Lunch Break

  • Time:13:30
    Speaker:

    Session / Topic:

    Output tables

  • Time:14:15
    Speaker:

    Session / Topic:

    Perseus introduction

  • Time:15:00
    Speaker:

    -

    Session / Topic:

    Coffee Break

  • Time:15:30
    Speaker:

    Session / Topic:

    Perseus basic tutorial I

  • Time:16:15
    Speaker:

    Session / Topic:

    Perseus basic tutorial II

  • Time:17:00
    Speaker:

    Session / Topic:

    Question session

10.11

  • Time Speaker Session / Topic
  • Time:09:00
    Speaker:

    Session / Topic:

    MaxDIA identification

  • Time:09:45
    Speaker:

    Session / Topic:

    MaxDIA quantification

  • Time:10:30
    Speaker:

    -

    Session / Topic:

    Coffee break

  • Time:11:00
    Speaker:

    Session / Topic:

    MaxQuant DIA tutorial

  • Time:11:45
    Speaker:

    Session / Topic:

    Single-cell proteomics

  • Time:12:30
    Speaker:

    -

    Session / Topic:

    Lunch Break

  • Time:13:30
    Speaker:

    Session / Topic:

    Metadata in proteomics

  • Time:14:15
    Speaker:

    Session / Topic:

    PTMs I

  • Time:15:00
    Speaker:

    -

    Session / Topic:

    Coffee Break

  • Time:15:30
    Speaker:

    Session / Topic:

    PTMs II

  • Time:16:15
    Speaker:

    Session / Topic:

    PTMs analysis

  • Time:17:00
    Speaker:

    Session / Topic:

    Question session

Course highlights

Updated MaxDIA, Single-cell proteomics analysis and PTM analysis

Speakers

Pelagia Kyriakidou

Helen Hohenthanner

Jinqiu Xiao

Walter Viegener